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Artifacts Summary

This page provides a list of the FHIR artifacts defined as part of this implementation guide.

Structures: Resource Profiles

These define constraints on FHIR resources for systems conforming to this implementation guide.

Diagnostic Implication

Base profile that defines Diagnostic observations returned from GenomOncology's API suite.

Gene Implication

Base profile that defines Gene observations returned from GenomOncology's API suite.

Genomics Research Study

Base profile that defines Research Study returned from GenomOncology's API suite.

Genomics Variant

Base profile that defines Variants returned from GenomOncology's API suite.

Prognostic Implication

Base profile that defines prognostic observations returned from GenomOncology's API suite.

Reference Citation

Base profile that defines Reference returned from GenomOncology's API suite.

Therapeutic Implication

Base profile that defines Therapeutic observations returned from GenomOncology's API suite.

Variant Implication

Base profile that defines characteristics shared by all Variant Implication observations returned from GenomOncology's API suite.

Structures: Extension Definitions

These define constraints on FHIR data types for systems conforming to this implementation guide.

Distance To Nearest Recruiting Location

Distance in miles to the nearest recruiting facility for a given ResearchStudy

References

Bibliographic Reference Citations

Variants Assessed

Used to references a specific Varaint that was assessed

Terminology: Value Sets

These define sets of codes used by systems conforming to this implementation guide.

Diseases

Diseases from NCBI

GenomOncology Diagnosis Status

Possible values for diagnosis status

GenomOncology Mutation Types

Variant Mutation Types

GenomOncology Prognoses

Possible values for prognosis

GenomOncology Prognosis Tier Values

Possible values for Prognosis Tier

GenomOncology Therapeutic Response

Possible values for a given treatment's responsiveness

GenomOncology Therapeutic Settings

Possible values for therapeutic settings

GenomOncology Therapeutic, Prognostic, and Diagnostic Sources

Possible values for therapeutic, prognostic, and diagnostic sources

GenomOncology Variant Significance

Possible values for Variant Significance

GenomOncology Variant Tier Values

Possible values for Variant Tier

Terminology: Code Systems

These define new code systems used by systems conforming to this implementation guide.

GenomOncology Diagnosis Codes

These codes are currently 'TBD' codes. The CG WG plans to request formal LOINC codes to replace these codes as these concepts are validated.

GenomOncology Diagnosis Status

Possible diagnosis status values

GenomOncology Gene Codes

These codes are currently 'TBD' codes. The CG WG plans to request formal LOINC codes to replace these codes as these concepts are validated.

GenomOncology Mutation Types

Mutation types for variants defined by GenomOncology.

GenomOncology Observations

The GO Observation Category codesystem

GenomOncology Prognosis

Possible prognosis values

GenomOncology Prognosis Codes

These codes are currently 'TBD' codes. The CG WG plans to request formal LOINC codes to replace these codes as these concepts are validated.

GenomOncology Prognosis Tiers

Prognosis tiers tied to implications

GenomOncology Therapeutic Codes

These codes are currently 'TBD' codes. The CG WG plans to request formal LOINC codes to replace these codes as these concepts are validated.

GenomOncology Therapeutic Responses

Indication of a given therapy's responsiveness

GenomOncology Therapeutic Settings

Therapy Setting

GenomOncology Therapeutic, Prognostic, and Diagnostic Sources

Sources of origin for therapies, diagnoses, and prognoses

GenomOncology Variant Codes

These codes are currently 'TBD' codes. The CG WG plans to request formal LOINC codes to replace these codes as these concepts are validated.

GenomOncology Variant Significance

Variant tiers tied to implications

GenomOncology Variant Tiers

Variant tiers tied to implications