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: GenomOncology Variant Significance - JSON Representation

Active as of 2024-12-11

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{
  "resourceType" : "CodeSystem",
  "id" : "variant-significance-codesystem",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem variant-significance-codesystem</b></p><a name=\"variant-significance-codesystem\"> </a><a name=\"hcvariant-significance-codesystem\"> </a><a name=\"variant-significance-codesystem-en-US\"> </a><p>This  code system <code>http://fhir.genomoncology.io/CodeSystem/variant-significance-codesystem</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style=\"white-space:nowrap\">oncogenic<a name=\"variant-significance-codesystem-oncogenic\"> </a></td><td>Oncogenic</td></tr><tr><td style=\"white-space:nowrap\">likely_oncogenic<a name=\"variant-significance-codesystem-likely_oncogenic\"> </a></td><td>Likely Oncogenic</td></tr><tr><td style=\"white-space:nowrap\">vus<a name=\"variant-significance-codesystem-vus\"> </a></td><td>VUS</td></tr><tr><td style=\"white-space:nowrap\">likely_benign<a name=\"variant-significance-codesystem-likely_benign\"> </a></td><td>Likely Benign</td></tr><tr><td style=\"white-space:nowrap\">benign<a name=\"variant-significance-codesystem-benign\"> </a></td><td>Benign</td></tr></table></div>"
  },
  "url" : "http://fhir.genomoncology.io/CodeSystem/variant-significance-codesystem",
  "version" : "0.2.0",
  "name" : "VariantSignificance",
  "title" : "GenomOncology Variant Significance",
  "status" : "active",
  "date" : "2024-12-11T19:26:03+00:00",
  "publisher" : "GenomOncology",
  "contact" : [
    {
      "name" : "GenomOncology",
      "telecom" : [
        {
          "system" : "url",
          "value" : "http://genomoncology.com"
        }
      ]
    }
  ],
  "description" : "Variant tiers tied to implications",
  "content" : "complete",
  "count" : 5,
  "concept" : [
    {
      "code" : "oncogenic",
      "display" : "Oncogenic"
    },
    {
      "code" : "likely_oncogenic",
      "display" : "Likely Oncogenic"
    },
    {
      "code" : "vus",
      "display" : "VUS"
    },
    {
      "code" : "likely_benign",
      "display" : "Likely Benign"
    },
    {
      "code" : "benign",
      "display" : "Benign"
    }
  ]
}