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: GenomOncology Variant Codes - JSON Representation

Active as of 2024-12-11

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{
  "resourceType" : "CodeSystem",
  "id" : "observation-variant-implication-component-codesystem",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem observation-variant-implication-component-codesystem</b></p><a name=\"observation-variant-implication-component-codesystem\"> </a><a name=\"hcobservation-variant-implication-component-codesystem\"> </a><a name=\"observation-variant-implication-component-codesystem-en-US\"> </a><p>This case-sensitive code system <code>http://fhir.genomoncology.io/CodeSystem/observation-variant-implication-component-codesystem</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style=\"white-space:nowrap\">variant_description<a name=\"observation-variant-implication-component-codesystem-variant_description\"> </a></td><td>Variant Description</td></tr><tr><td style=\"white-space:nowrap\">display<a name=\"observation-variant-implication-component-codesystem-display\"> </a></td><td>Display</td></tr><tr><td style=\"white-space:nowrap\">is_itd<a name=\"observation-variant-implication-component-codesystem-is_itd\"> </a></td><td>Is ITD</td></tr><tr><td style=\"white-space:nowrap\">mutation_type<a name=\"observation-variant-implication-component-codesystem-mutation_type\"> </a></td><td>Mutation Type</td></tr><tr><td style=\"white-space:nowrap\">tier<a name=\"observation-variant-implication-component-codesystem-tier\"> </a></td><td>Tier</td></tr><tr><td style=\"white-space:nowrap\">significance<a name=\"observation-variant-implication-component-codesystem-significance\"> </a></td><td>Significance</td></tr><tr><td style=\"white-space:nowrap\">potential_germline_findings<a name=\"observation-variant-implication-component-codesystem-potential_germline_findings\"> </a></td><td>Potential Germline Findings</td></tr></table></div>"
  },
  "url" : "http://fhir.genomoncology.io/CodeSystem/observation-variant-implication-component-codesystem",
  "version" : "0.2.0",
  "name" : "VariantComponents",
  "title" : "GenomOncology Variant Codes",
  "status" : "active",
  "date" : "2024-12-11T19:26:03+00:00",
  "publisher" : "GenomOncology",
  "contact" : [
    {
      "name" : "GenomOncology",
      "telecom" : [
        {
          "system" : "url",
          "value" : "http://genomoncology.com"
        }
      ]
    }
  ],
  "description" : "These codes are currently 'TBD' codes. The CG WG plans to request formal LOINC codes to replace these codes as these concepts are validated.",
  "caseSensitive" : true,
  "content" : "complete",
  "count" : 7,
  "concept" : [
    {
      "code" : "variant_description",
      "display" : "Variant Description"
    },
    {
      "code" : "display",
      "display" : "Display"
    },
    {
      "code" : "is_itd",
      "display" : "Is ITD"
    },
    {
      "code" : "mutation_type",
      "display" : "Mutation Type"
    },
    {
      "code" : "tier",
      "display" : "Tier"
    },
    {
      "code" : "significance",
      "display" : "Significance"
    },
    {
      "code" : "potential_germline_findings",
      "display" : "Potential Germline Findings"
    }
  ]
}